Visual DSD
Visual DSD is a programming language and software tool for designing nucleic acid circuits.
Acknowledgements
- Visual DSD was developed by the following people, in reverse order of joining the project: Carlo Spaccasassi, Rasmus Petersen, Kathryn Gray, Colin Gravill, Neil Dalchau, Filippo Polo, Simon Youssef, Matthew Lakin and Andrew Phillips.
- Luca Cardelli assisted with the design of the DSD language and extensive testing of DSD. Erik Winfree and his group have provided valuable feedback on DSD, together with Georg Seelig and his group.
- The core DSD language was developed in F#. It uses Dynamic Data Display for visualising simulation plots and Microsoft Automatic Graph Layout for visualising networks.
Posts
NuProbe and Microsoft Researchers Invent a Deep Learning Model for Predicting NGS Sequencing Depth
I led a computational team to help develop a deep learning method for predicting Next Generation Sequencing depth, in collaboration with NuProbe and Rice University.
NuProbe
NuProbe
Researchers build nanoscale distributed DNA computing systems from artificial protocells
I led a computational team using our Visual DSD language to help develop communicating DNA circuits encapsulated in synthetic protocells, in collaboration with Eindhoven University of Technology and Radboud University.
Microsoft Research
Microsoft Research
Scientists use machine learning to predict DNA binding rates from sequence
I led a computational team to help develop a machine learning method for predicting DNA binding rates, in collaboration with Rice University.
Microsoft Research
Microsoft Research
Researchers build nanoscale computational circuit boards with DNA
I led a computational team using our Visual DSD language to help develop scalable logic circuits localised to DNA, in collaboration with the University of Washington.
Microsoft Research
Microsoft Research
Computing with soup
I led a team to develop a programming language for DNA circuits, which featured in a broader article on molecular computing.
The Economist
The Economist
