Pi-calculus

Stochastic simulation of multiple process calculi for biology

A Peptide Filtering Relation Quantifies MHC Class I Peptide Optimization

A generic abstract machine for stochastic process calculi

Computational modeling of the EGFR network elucidates control mechanisms regulating signal dynamics

A process model of Rho GTP-binding proteins

A Process Model of Actin Polymerisation

An Abstract Machine for the Stochastic Bioambient calculus

A Visual Process Calculus for Biology

Compositionality, stochasticity, and cooperativity in dynamic models of gene regulation

A Chart Semantics for the Pi-Calculus

Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus

A Compositional Approach to the Stochastic Dynamics of Gene Networks

A Graphical Representation for Biological Processes in the Stochastic pi-Calculus

A Distributed Abstract Machine for Boxed Ambient Calculi